WormBase Tree Display for CDS: PPA15673
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PPA15673 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 186 | |||
312 | 399 | |||||
657 | 753 | |||||
862 | 922 | |||||
1070 | 1171 | |||||
1247 | 1309 | |||||
1390 | 1749 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-56.75 | ||
DB_remark | contains similarity to Pfam domain PF00178 (Ets-domain); contains similarity to Interpro domains IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00105227 | ||||
Corresponding_transcript | PPA15673.1 | |||||
Corresponding_protein | PP62996 | |||||
Corresponding_oligo_set | GPL14372_Probes_87183 | |||||
Matching_cDNA | FG099818 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_87183 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 12.6419 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-56.75 | Curator_confirmed | WBPerson4055 | |||
Method | curated |