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WormBase Tree Display for CDS: PPA15673

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Name Class

PPA15673SMapS_parentSequencePPA_ChrI
StructureSource_exons1186
312399
657753
862922
10701171
12471309
13901749
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-56.75
DB_remarkcontains similarity to Pfam domain PF00178 (Ets-domain); contains similarity to Interpro domains IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
Start_not_found1
VisibleGeneWBGene00105227
Corresponding_transcriptPPA15673.1
Corresponding_proteinPP62996
Corresponding_oligo_setGPL14372_Probes_87183
Matching_cDNAFG099818Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_87183
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010112.6419From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2844-56.75Curator_confirmedWBPerson4055
Methodcurated