WormBase Tree Display for CDS: PPA15678
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| PPA15678 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (49) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S233-19.10 | ||
| DB_remark | contains similarity to Pfam domains PF00415 (Regulator of chromosome condensation (RCC1) repeat), PF03006 (Haemolysin-III related); contains similarity to Interpro domains IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR000408 (Regulator of chromosome condensation, RCC1), IPR004254 (AdipoR/Haemolysin-III-related) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00105232 | ||||
| Corresponding_transcript | PPA15678.1 | |||||
| Corresponding_protein | PP53329 | |||||
| Corresponding_oligo_set | GPL14372_Probes_25638 | |||||
| GPL14372_Probes_25642 | ||||||
| GPL14372_Probes_57931 | ||||||
| GPL14372_Probes_67353 | ||||||
| GPL14372_Probes_67354 | ||||||
| GPL14372_Probes_67355 | ||||||
| GPL14372_Probes_67356 | ||||||
| GPL14372_Probes_67357 | ||||||
| GPL14372_Probes_67358 | ||||||
| GPL14372_Probes_67359 | ||||||
| Matching_cDNA | FG104771 | Inferred_automatically | transcript_builder.pl | |||
| FG104577 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_25638 | |||||
| GPL14372_Probes_25642 | ||||||
| GPL14372_Probes_57931 | ||||||
| GPL14372_Probes_67353 | ||||||
| GPL14372_Probes_67354 | ||||||
| GPL14372_Probes_67355 | ||||||
| GPL14372_Probes_67356 | ||||||
| GPL14372_Probes_67357 | ||||||
| GPL14372_Probes_67358 | ||||||
| GPL14372_Probes_67359 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.55213 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 9.7877 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S233-19.10 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
