WormBase Tree Display for CDS: PPA15699
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| PPA15699 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrIV | |||
| Structure | Source_exons (18) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S283-0.32 | ||
| DB_remark | contains similarity to Pfam domains PF00790 (VHS domain), PF01363 (FYVE zinc finger), PF12210 (Hepatocyte growth factor-regulated tyrosine kinase substrate); contains similarity to Interpro domains IPR002014 (VHS domain), IPR024641 (Hepatocyte growth factor-regulated tyrosine kinase substrate, helical domain), IPR011011 (Zinc finger, FYVE/PHD-type), IPR000306 (FYVE zinc finger), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR008942 (ENTH/VHS), IPR017073 (Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00105253 | ||||
| Corresponding_transcript | PPA15699.1 | |||||
| Corresponding_protein | PP74485 | |||||
| Corresponding_oligo_set | GPL14372_Probes_7910 | |||||
| GPL14372_Probes_7911 | ||||||
| Microarray_results | GPL14372_Probes_7910 | |||||
| GPL14372_Probes_7911 | ||||||
| RNASeq_FPKM | WBls:0000032 | 8.53784 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.03325 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 21 Feb 2019 09:49:45 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S283-0.32 | Curator_confirmed | WBPerson4055 | |||
| [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | ||||
| Method | curated |
