WormBase Tree Display for CDS: PPA16022
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PPA16022 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (33) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S576-0.39 | ||
TREEFAM | TREEFAM_ID | TF323445 | ||||
DB_remark | contains similarity to Pfam domains PF07992 (Pyridine nucleotide-disulphide oxidoreductase), PF10220 (Smg8_Smg9); contains similarity to Interpro domains IPR015904 (Sulphide quinone-reductase), IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR019354 (Nonsense-mediated mRNA decay factor SMG8-like), IPR023753 (FAD/NAD(P)-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00105576 | ||||
Corresponding_transcript | PPA16022.1 | |||||
Corresponding_protein | PP67730 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | FE941548 | Inferred_automatically | transcript_builder.pl | |||
FG095345 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 18.9292 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 29.0604 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S576-0.39 | Curator_confirmed | WBPerson4055 | |||
Method | curated |