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WormBase Tree Display for CDS: PPA16022

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Name Class

PPA16022SMapS_parentSequencePPA_ChrII
StructureSource_exons (33)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S576-0.39
TREEFAMTREEFAM_IDTF323445
DB_remarkcontains similarity to Pfam domains PF07992 (Pyridine nucleotide-disulphide oxidoreductase), PF10220 (Smg8_Smg9); contains similarity to Interpro domains IPR015904 (Sulphide quinone-reductase), IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR019354 (Nonsense-mediated mRNA decay factor SMG8-like), IPR023753 (FAD/NAD(P)-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00105576
Corresponding_transcriptPPA16022.1
Corresponding_proteinPP67730
Corresponding_oligo_set (12)
Matching_cDNAFE941548Inferred_automaticallytranscript_builder.pl
FG095345Inferred_automaticallytranscript_builder.pl
Microarray_results (12)
RNASeq_FPKMWBls:000003218.9292From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010129.0604From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S576-0.39Curator_confirmedWBPerson4055
Methodcurated