WormBase Tree Display for CDS: PPA16150
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PPA16150 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 129 | |||
331 | 426 | |||||
476 | 565 | |||||
629 | 724 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S273-8.63 | ||
DB_remark | PPA-LRON-12.2 protein; contains similarity to Pfam domain PF18121 (TFA2 Winged helix domain 2); contains similarity to Interpro domains IPR036390 (Winged helix DNA-binding domain superfamily), IPR016656 (Transcription initiation factor TFIIE, beta subunit), IPR040501 (TFA2, Winged helix domain 2) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00105704 | ||||
Corresponding_transcript | PPA16150.1 | |||||
Corresponding_protein | PP68016 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S273-8.63 | Curator_confirmed | WBPerson4055 | |||
Method | curated |