WormBase Tree Display for CDS: PPA16180
expand all nodes | collapse all nodes | view schema
PPA16180 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S273-9.16 | ||
TREEFAM | TREEFAM_ID | TF300574 | ||||
DB_remark | PPA-DAF-22.1 protein; contains similarity to Pfam domains PF02036 (SCP-2 sterol transfer family), PF02803 (Thiolase, C-terminal domain); contains similarity to Interpro domains IPR020617 (Thiolase, C-terminal), IPR016039 (Thiolase-like), IPR003033 (SCP2 sterol-binding domain), IPR036527 (SCP2 sterol-binding domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00105734 | ||||
Corresponding_transcript | PPA16180.1 | |||||
Corresponding_protein | PP70076 | |||||
Corresponding_oligo_set | GPL14372_Probes_79421 | |||||
GPL14372_Probes_79422 | ||||||
GPL14372_Probes_79423 | ||||||
Microarray_results | GPL14372_Probes_79421 | |||||
GPL14372_Probes_79422 | ||||||
GPL14372_Probes_79423 | ||||||
RNASeq_FPKM | WBls:0000032 | 14.4763 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 34.197 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S273-9.16 | Curator_confirmed | WBPerson4055 | |||
Method | curated |