WormBase Tree Display for CDS: PPA16223
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PPA16223 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 91 | |||
137 | 208 | |||||
291 | 359 | |||||
435 | 538 | |||||
610 | 704 | |||||
747 | 909 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S273-10.32 | ||
TREEFAM | TREEFAM_ID | TF315133 | ||||
DB_remark | contains similarity to Pfam domain PF00046 (Homeodomain); contains similarity to Interpro domains IPR001356 (Homeobox domain), IPR020479 (Homeobox domain, metazoa), IPR009057 (Homeobox-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00105777 | ||||
Corresponding_transcript | PPA16223.1 | |||||
Corresponding_protein | PP57857 | |||||
Corresponding_oligo_set | GPL14372_Probes_25428 | |||||
Microarray_results | GPL14372_Probes_25428 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.74893 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S273-10.32 | Curator_confirmed | WBPerson4055 | |||
Method | curated |