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WormBase Tree Display for CDS: PPA16224

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Name Class

PPA16224SMapS_parentSequencePPA_ChrII
StructureSource_exons (25)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S273-10.33
TREEFAMTREEFAM_IDTF319073
DB_remarkcontains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00105778
Corresponding_transcriptPPA16224.1
Corresponding_proteinPP65439
Corresponding_oligo_set (11)
Microarray_results (11)
RNASeq_FPKMWBls:00000322.66375From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001015.24283From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S273-10.33Curator_confirmedWBPerson4055
Methodcurated