WormBase Tree Display for CDS: PPA16224
expand all nodes | collapse all nodes | view schema
PPA16224 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (25) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S273-10.33 | ||
TREEFAM | TREEFAM_ID | TF319073 | ||||
DB_remark | contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00105778 | ||||
Corresponding_transcript | PPA16224.1 | |||||
Corresponding_protein | PP65439 | |||||
Corresponding_oligo_set (11) | ||||||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 2.66375 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.24283 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S273-10.33 | Curator_confirmed | WBPerson4055 | |||
Method | curated |