WormBase Tree Display for CDS: PPA16258
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PPA16258 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (114) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S273-12.29 | ||
DB_remark | contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region), PF07064 (RIC1), PF10579 (Rapsyn N-terminal myristoylation and linker region); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR019568 (Rapsyn, myristoylation/linker region, N-terminal), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR009771 (Ribosome control protein 1), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
End_not_found | ||||||
Visible | Gene | WBGene00105812 | ||||
Corresponding_transcript | PPA16258.1 | |||||
Corresponding_protein | PP66910 | |||||
Corresponding_oligo_set (17) | ||||||
Microarray_results (17) | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S273-12.29 | Curator_confirmed | WBPerson4055 | |||
Method | curated |