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WormBase Tree Display for CDS: PPA16258

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Name Class

PPA16258SMapS_parentSequencePPA_ChrII
StructureSource_exons (114)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S273-12.29
DB_remarkcontains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region), PF07064 (RIC1), PF10579 (Rapsyn N-terminal myristoylation and linker region); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR019568 (Rapsyn, myristoylation/linker region, N-terminal), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR009771 (Ribosome control protein 1), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
End_not_found
VisibleGeneWBGene00105812
Corresponding_transcriptPPA16258.1
Corresponding_proteinPP66910
Corresponding_oligo_set (17)
Microarray_results (17)
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S273-12.29Curator_confirmedWBPerson4055
Methodcurated