WormBase Tree Display for CDS: PPA16269
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| PPA16269 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S273-13.44 | ||
| TREEFAM | TREEFAM_ID | TF313582 | ||||
| DB_remark | PPA-TTM-5 protein; contains similarity to Pfam domains PF00487 (Fatty acid desaturase), PF08557 (Sphingolipid Delta4-desaturase (DES)); contains similarity to Interpro domains IPR011388 (Sphingolipid delta4-desaturase), IPR013866 (Sphingolipid delta4-desaturase, N-terminal), IPR005804 (Fatty acid desaturase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00105823 | ||||
| Corresponding_transcript | PPA16269.1 | |||||
| Corresponding_protein | PP68820 | |||||
| Corresponding_oligo_set | GPL14372_Probes_79601 | |||||
| GPL14372_Probes_79602 | ||||||
| GPL14372_Probes_79604 | ||||||
| GPL14372_Probes_79605 | ||||||
| Matching_cDNA | FG097101 | Inferred_automatically | transcript_builder.pl | |||
| EB182709 | Inferred_automatically | transcript_builder.pl | ||||
| EB183624 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_79601 | |||||
| GPL14372_Probes_79602 | ||||||
| GPL14372_Probes_79604 | ||||||
| GPL14372_Probes_79605 | ||||||
| RNASeq_FPKM | WBls:0000032 | 25.0708 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 9.87016 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMS-S273-13.44 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
