WormBase Tree Display for CDS: PPA16489
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PPA16489 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (30) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-54.74 | ||
TREEFAM | TREEFAM_ID | TF312850 | ||||
DB_remark | contains similarity to Pfam domains PF00128 (Alpha amylase, catalytic domain), PF02806 (Alpha amylase, C-terminal all-beta domain); contains similarity to Interpro domains IPR006046 (Alpha amylase), IPR017853 (Glycoside hydrolase superfamily), IPR006047 (Glycosyl hydrolase, family 13, catalytic domain), IPR006048 (Alpha-amylase/branching enzyme, C-terminal all beta), IPR013780 (Glycosyl hydrolase, all-beta), IPR031319 (Alpha-amylase, C-terminal domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00106043 | ||||
Corresponding_transcript | PPA16489.1 | |||||
Corresponding_protein | PP66634 | |||||
Corresponding_oligo_set | GPL14372_Probes_71996 | |||||
Matching_cDNA | BI500132 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_71996 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 28.1388 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2840-54.74 | Curator_confirmed | WBPerson4055 | |||
Method | curated |