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WormBase Tree Display for CDS: PPA16489

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Name Class

PPA16489SMapS_parentSequencePPA_ChrIV
StructureSource_exons (30)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2840-54.74
TREEFAMTREEFAM_IDTF312850
DB_remarkcontains similarity to Pfam domains PF00128 (Alpha amylase, catalytic domain), PF02806 (Alpha amylase, C-terminal all-beta domain); contains similarity to Interpro domains IPR006046 (Alpha amylase), IPR017853 (Glycoside hydrolase superfamily), IPR006047 (Glycosyl hydrolase, family 13, catalytic domain), IPR006048 (Alpha-amylase/branching enzyme, C-terminal all beta), IPR013780 (Glycosyl hydrolase, all-beta), IPR031319 (Alpha-amylase, C-terminal domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00106043
Corresponding_transcriptPPA16489.1
Corresponding_proteinPP66634
Corresponding_oligo_setGPL14372_Probes_71996
Matching_cDNABI500132Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_71996
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010128.1388From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2840-54.74Curator_confirmedWBPerson4055
Methodcurated