WormBase Tree Display for CDS: PPA16820
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| PPA16820 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (39) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S394-2.13 | ||
| TREEFAM | TREEFAM_ID | TF313511 | ||||
| DB_remark | PPA-NOL-6 protein; contains similarity to Pfam domains PF03813 (Nrap protein domain 1), PF07690 (Major Facilitator Superfamily), PF17404 (Nrap protein domain 3), PF17405 (Nrap protein nucleotidyltransferase domain 4), PF17406 (Nrap protein PAP/OAS1-like domain 5), PF17407 (Nrap protein domain 6); contains similarity to Interpro domains IPR001958 (Tetracycline resistance protein TetA/multidrug resistance protein MdtG-like), IPR035082 (Nrap protein domain 1), IPR011701 (Major facilitator superfamily), IPR035371 (Nrap protein, domain 6), IPR036259 (MFS transporter superfamily), IPR043519 (Nucleotidyltransferase superfamily), IPR005554 (NOL6/Upt22), IPR035368 (Nrap protein, domain 3), IPR035370 (Nrap protein, domain 5), IPR035369 (Nrap protein, domain 4) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00106374 | ||||
| Corresponding_transcript | PPA16820.1 | |||||
| Corresponding_protein | PP65150 | |||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA | FG095418 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results (14) | ||||||
| RNASeq_FPKM | WBls:0000032 | 23.4686 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 8.39833 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S394-2.13 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
