WormBase Tree Display for CDS: PPA16824
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| PPA16824 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons | 1 | 138 | |||
| 185 | 312 | |||||
| 392 | 509 | |||||
| 1283 | 1379 | |||||
| 1441 | 1511 | |||||
| 1640 | 1720 | |||||
| 1774 | 1846 | |||||
| 1903 | 1967 | |||||
| 2045 | 2133 | |||||
| 2842 | 2944 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S394-2.60 | ||
| DB_remark | contains similarity to Pfam domain PF11538 (Snurportin1); contains similarity to Interpro domains IPR024721 (Snurportin-1, N-terminal), IPR017336 (Snurportin-1) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00106378 | ||||
| Corresponding_transcript | PPA16824.1 | |||||
| Corresponding_protein | PP74519 | |||||
| Corresponding_oligo_set | GPL14372_Probes_90490 | |||||
| GPL14372_Probes_90491 | ||||||
| GPL14372_Probes_90492 | ||||||
| GPL14372_Probes_90493 | ||||||
| GPL14372_Probes_90494 | ||||||
| Matching_cDNA | FG103921 | Inferred_automatically | transcript_builder.pl | |||
| FG104977 | Inferred_automatically | transcript_builder.pl | ||||
| EB184485 | Inferred_automatically | transcript_builder.pl | ||||
| FG106649 | Inferred_automatically | transcript_builder.pl | ||||
| FG106110 | Inferred_automatically | transcript_builder.pl | ||||
| FG103029 | Inferred_automatically | transcript_builder.pl | ||||
| FG106684 | Inferred_automatically | transcript_builder.pl | ||||
| FG102132 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_90490 | |||||
| GPL14372_Probes_90491 | ||||||
| GPL14372_Probes_90492 | ||||||
| GPL14372_Probes_90493 | ||||||
| GPL14372_Probes_90494 | ||||||
| RNASeq_FPKM | WBls:0000032 | 21.2365 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 40.1349 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 21 Feb 2019 09:50:14 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMA-S394-2.60 | Curator_confirmed | WBPerson4055 | |||
| [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | ||||
| Method | curated |
