WormBase Tree Display for CDS: PPA16903
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PPA16903 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 74 | |||
478 | 541 | |||||
850 | 902 | |||||
1220 | 1293 | |||||
1454 | 1546 | |||||
1697 | 1785 | |||||
2081 | 2193 | |||||
2807 | 2882 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2842-8.22 | ||
TREEFAM | TREEFAM_ID | TF321978 | ||||
DB_remark | contains similarity to Pfam domain PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domain IPR002486 (Nematode cuticle collagen, N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00106457 | ||||
Corresponding_transcript | PPA16903.1 | |||||
Corresponding_protein | PP51432 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2842-8.22 | Curator_confirmed | WBPerson4055 | |||
Method | curated |