WormBase Tree Display for CDS: PPA16940

PPA16940 SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons (12)
  DB_info: Database: pristionchus.org cds gene-UMM-S2842-6.7
    DB_remark: contains similarity to Pfam domain PF00089 (Trypsin); contains similarity to Interpro domains IPR043504 (Peptidase S1, PA clan, chymotrypsin-like fold), IPR001254 (Serine proteases, trypsin domain), IPR009003 (Peptidase S1, PA clan)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00106494
    Corresponding_transcript: PPA16940.1
    Corresponding_protein: PP55442
    Corresponding_oligo_set: GPL14372_Probes_61251
      GPL14372_Probes_61252
      GPL14372_Probes_61253
      GPL14372_Probes_61254
      GPL14372_Probes_61255
    Matching_cDNA: FG098608 Inferred_automatically: transcript_builder.pl
      DV018852 Inferred_automatically: transcript_builder.pl
      FG099812 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_61251
      GPL14372_Probes_61252
      GPL14372_Probes_61253
      GPL14372_Probes_61254
      GPL14372_Probes_61255
    RNASeq_FPKM: WBls:0000032 26.7502 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 52.6625 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMM-S2842-6.7 Curator_confirmed: WBPerson4055
  Method: curated