WormBase Tree Display for CDS: PPA16991
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PPA16991 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (35) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2842-2.10 | ||
TREEFAM | TREEFAM_ID | TF312988 | ||||
DB_remark | contains similarity to Pfam domain PF01694 (Rhomboid family); contains similarity to Interpro domains IPR022764 (Peptidase S54, rhomboid domain), IPR035952 (Rhomboid-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00106545 | ||||
Corresponding_transcript | PPA16991.1 | |||||
Corresponding_protein | PP71595 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2842-2.10 | Curator_confirmed | WBPerson4055 | |||
Method | curated |