WormBase Tree Display for CDS: PPA17016
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| PPA17016 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (36) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S2842-1.7 | ||
| DB_remark | PPA-DRH-3.2 protein; contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain), PF11648 (C-terminal domain of RIG-I); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR038557 (RIG-I-like receptor, C-terminal domain superfamily), IPR021673 (RIG-I-like receptor, C-terminal regulatory domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00106570 | ||||
| Corresponding_transcript | PPA17016.1 | |||||
| Corresponding_protein | PP52152 | |||||
| Corresponding_oligo_set | GPL14372_Probes_14564 | |||||
| GPL14372_Probes_14565 | ||||||
| GPL14372_Probes_14566 | ||||||
| GPL14372_Probes_14567 | ||||||
| Microarray_results | GPL14372_Probes_14564 | |||||
| GPL14372_Probes_14565 | ||||||
| GPL14372_Probes_14566 | ||||||
| GPL14372_Probes_14567 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMS-S2842-1.7 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
