WormBase Tree Display for CDS: PPA17219
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PPA17219 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (46) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S233-5.7 | ||
TREEFAM | TREEFAM_ID | TF314588 | ||||
DB_remark | PPA-CHO-1 protein; contains similarity to Pfam domains PF00474 (Sodium:solute symporter family), PF07716 (Basic region leucine zipper); contains similarity to Interpro domains IPR038377 (Sodium/glucose symporter superfamily), IPR001734 (Sodium/solute symporter), IPR004827 (Basic-leucine zipper domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00106773 | ||||
Corresponding_transcript | PPA17219.1 | |||||
Corresponding_protein | PP65323 | |||||
Corresponding_oligo_set (11) | ||||||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 2.67892 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0.790894 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S233-5.7 | Curator_confirmed | WBPerson4055 | |||
Method | curated |