WormBase Tree Display for CDS: PPA17302
expand all nodes | collapse all nodes | view schema
PPA17302 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 48 | |||
96 | 146 | |||||
197 | 316 | |||||
370 | 456 | |||||
1248 | 1386 | |||||
1432 | 1490 | |||||
1531 | 1605 | |||||
1655 | 1748 | |||||
1828 | 1964 | |||||
2043 | 2189 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S233-1.45 | ||
DB_remark | contains similarity to Pfam domains PF00107 (Zinc-binding dehydrogenase), PF08240 (Alcohol dehydrogenase GroES-like domain); contains similarity to Interpro domains IPR011032 (GroES-like superfamily), IPR036291 (NAD(P)-binding domain superfamily), IPR013149 (Alcohol dehydrogenase-like, C-terminal), IPR020843 (Polyketide synthase, enoylreductase domain), IPR013154 (Alcohol dehydrogenase-like, N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00106856 | ||||
Corresponding_transcript | PPA17302.1 | |||||
Corresponding_protein | PP71030 | |||||
Corresponding_oligo_set | GPL14372_Probes_19587 | |||||
GPL14372_Probes_19588 | ||||||
Microarray_results | GPL14372_Probes_19587 | |||||
GPL14372_Probes_19588 | ||||||
RNASeq_FPKM | WBls:0000032 | 17.1243 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S233-1.45 | Curator_confirmed | WBPerson4055 | |||
Method | curated |