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WormBase Tree Display for CDS: PPA17302

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Name Class

PPA17302SMapS_parentSequencePPA_ChrIV
StructureSource_exons148
96146
197316
370456
12481386
14321490
15311605
16551748
18281964
20432189
DB_infoDatabasepristionchus.orgcdsgene-UMM-S233-1.45
DB_remarkcontains similarity to Pfam domains PF00107 (Zinc-binding dehydrogenase), PF08240 (Alcohol dehydrogenase GroES-like domain); contains similarity to Interpro domains IPR011032 (GroES-like superfamily), IPR036291 (NAD(P)-binding domain superfamily), IPR013149 (Alcohol dehydrogenase-like, C-terminal), IPR020843 (Polyketide synthase, enoylreductase domain), IPR013154 (Alcohol dehydrogenase-like, N-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00106856
Corresponding_transcriptPPA17302.1
Corresponding_proteinPP71030
Corresponding_oligo_setGPL14372_Probes_19587
GPL14372_Probes_19588
Microarray_resultsGPL14372_Probes_19587
GPL14372_Probes_19588
RNASeq_FPKMWBls:000003217.1243From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S233-1.45Curator_confirmedWBPerson4055
Methodcurated