WormBase Tree Display for CDS: PPA17309
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| PPA17309 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (17) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S233-0.49 | ||
| TREEFAM | TREEFAM_ID | TF106249 | ||||
| DB_remark | contains similarity to Pfam domains PF00448 (SRP54-type protein, GTPase domain), PF02881 (SRP54-type protein, helical bundle domain), PF02978 (Signal peptide binding domain); contains similarity to Interpro domains IPR036225 (SRP/SRP receptor, N-terminal), IPR036891 (Signal recognition particle, SRP54 subunit, M-domain superfamily), IPR013822 (Signal recognition particle SRP54, helical bundle), IPR042101 (Signal recognition particle SRP54, N-terminal domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR022941 (Signal recognition particle, SRP54 subunit), IPR004125 (Signal recognition particle, SRP54 subunit, M-domain), IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR006325 (Signal recognition particle, SRP54 subunit, eukaryotic), IPR003593 (AAA+ ATPase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00106863 | ||||
| Corresponding_transcript | PPA17309.1 | |||||
| Corresponding_protein | PP54741 | |||||
| Corresponding_oligo_set | GPL14372_Probes_70682 | |||||
| GPL14372_Probes_70683 | ||||||
| GPL14372_Probes_70684 | ||||||
| GPL14372_Probes_70685 | ||||||
| GPL14372_Probes_70686 | ||||||
| GPL14372_Probes_70687 | ||||||
| GPL14372_Probes_70688 | ||||||
| Matching_cDNA | FG101759 | Inferred_automatically | transcript_builder.pl | |||
| FG101748 | Inferred_automatically | transcript_builder.pl | ||||
| FE932158 | Inferred_automatically | transcript_builder.pl | ||||
| FG100005 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_70682 | |||||
| GPL14372_Probes_70683 | ||||||
| GPL14372_Probes_70684 | ||||||
| GPL14372_Probes_70685 | ||||||
| GPL14372_Probes_70686 | ||||||
| GPL14372_Probes_70687 | ||||||
| GPL14372_Probes_70688 | ||||||
| RNASeq_FPKM | WBls:0000032 | 140.301 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 39.674 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMS-S233-0.49 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
