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WormBase Tree Display for CDS: PPA17400

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Name Class

PPA17400SMapS_parentSequencePPA_ChrI
StructureSource_exons (39)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S207-15.42
DB_remarkPPA-PAM-1 protein; contains similarity to Pfam domains PF00406 (Adenylate kinase), PF01433 (Peptidase family M1 domain), PF05191 (Adenylate kinase, active site lid), PF11838 (ERAP1-like C-terminal domain), PF17900 (Peptidase M1 N-terminal domain); contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase), IPR006259 (Adenylate kinase subfamily), IPR042097 (Aminopeptidase N-like , N-terminal domain superfamliy), IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR024571 (ERAP1-like C-terminal domain), IPR007862 (Adenylate kinase, active site lid domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00106954
Corresponding_transcriptPPA17400.1
Corresponding_proteinPP58231
Corresponding_oligo_setGPL14372_Probes_72766
GPL14372_Probes_72768
GPL14372_Probes_72769
GPL14372_Probes_72770
GPL14372_Probes_72771
Matching_cDNABQ088098Inferred_automaticallytranscript_builder.pl
BQ087830Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_72766
GPL14372_Probes_72768
GPL14372_Probes_72769
GPL14372_Probes_72770
GPL14372_Probes_72771
RNASeq_FPKMWBls:000003211.001From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010114.1726From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S207-15.42Curator_confirmedWBPerson4055
Methodcurated