WormBase Tree Display for CDS: PPA17400
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PPA17400 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (39) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-15.42 | ||
DB_remark | PPA-PAM-1 protein; contains similarity to Pfam domains PF00406 (Adenylate kinase), PF01433 (Peptidase family M1 domain), PF05191 (Adenylate kinase, active site lid), PF11838 (ERAP1-like C-terminal domain), PF17900 (Peptidase M1 N-terminal domain); contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase), IPR006259 (Adenylate kinase subfamily), IPR042097 (Aminopeptidase N-like , N-terminal domain superfamliy), IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR024571 (ERAP1-like C-terminal domain), IPR007862 (Adenylate kinase, active site lid domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00106954 | ||||
Corresponding_transcript | PPA17400.1 | |||||
Corresponding_protein | PP58231 | |||||
Corresponding_oligo_set | GPL14372_Probes_72766 | |||||
GPL14372_Probes_72768 | ||||||
GPL14372_Probes_72769 | ||||||
GPL14372_Probes_72770 | ||||||
GPL14372_Probes_72771 | ||||||
Matching_cDNA | BQ088098 | Inferred_automatically | transcript_builder.pl | |||
BQ087830 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_72766 | |||||
GPL14372_Probes_72768 | ||||||
GPL14372_Probes_72769 | ||||||
GPL14372_Probes_72770 | ||||||
GPL14372_Probes_72771 | ||||||
RNASeq_FPKM | WBls:0000032 | 11.001 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.1726 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-15.42 | Curator_confirmed | WBPerson4055 | |||
Method | curated |