WormBase Tree Display for CDS: PPA17407
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| PPA17407 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-15.65 | ||
| DB_remark | contains similarity to Pfam domains PF01851 (Proteasome/cyclosome repeat), PF18004 (26S proteasome regulatory subunit RPN2 C-terminal domain); contains similarity to Interpro domains IPR035266 (), IPR040623 (26S proteasome regulatory subunit RPN2, C-terminal), IPR002015 (Proteasome/cyclosome repeat), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00106961 | ||||
| Corresponding_transcript | PPA17407.1 | |||||
| Corresponding_protein | PP54069 | |||||
| Corresponding_oligo_set | GPL14372_Probes_72745 | |||||
| GPL14372_Probes_72746 | ||||||
| GPL14372_Probes_72747 | ||||||
| GPL14372_Probes_72748 | ||||||
| GPL14372_Probes_72749 | ||||||
| Matching_cDNA | FE935595 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_72745 | |||||
| GPL14372_Probes_72746 | ||||||
| GPL14372_Probes_72747 | ||||||
| GPL14372_Probes_72748 | ||||||
| GPL14372_Probes_72749 | ||||||
| RNASeq_FPKM | WBls:0000032 | 64.2629 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 79.515 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-15.65 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
