WormBase Tree Display for CDS: PPA17437
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| PPA17437 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 151 | |||
| 503 | 576 | |||||
| 721 | 820 | |||||
| 1479 | 1597 | |||||
| 1715 | 1807 | |||||
| 2033 | 2153 | |||||
| 2826 | 2932 | |||||
| 3326 | 3427 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-17.25 | ||
| DB_remark | contains similarity to Pfam domain PF00194 (Eukaryotic-type carbonic anhydrase); contains similarity to Interpro domains IPR036398 (Alpha carbonic anhydrase domain superfamily), IPR001148 (Alpha carbonic anhydrase domain), IPR023561 (Carbonic anhydrase, alpha-class) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00106991 | ||||
| Corresponding_transcript | PPA17437.1 | |||||
| Corresponding_protein | PP52605 | |||||
| Corresponding_oligo_set | GPL14372_Probes_20465 | |||||
| GPL14372_Probes_20466 | ||||||
| GPL14372_Probes_20467 | ||||||
| GPL14372_Probes_20468 | ||||||
| GPL14372_Probes_20469 | ||||||
| Matching_cDNA | CK928299 | Inferred_automatically | transcript_builder.pl | |||
| CK928458 | Inferred_automatically | transcript_builder.pl | ||||
| CN442677 | Inferred_automatically | transcript_builder.pl | ||||
| FG102830 | Inferred_automatically | transcript_builder.pl | ||||
| FG096034 | Inferred_automatically | transcript_builder.pl | ||||
| CN442594 | Inferred_automatically | transcript_builder.pl | ||||
| FG095793 | Inferred_automatically | transcript_builder.pl | ||||
| FG097000 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_20465 | |||||
| GPL14372_Probes_20466 | ||||||
| GPL14372_Probes_20467 | ||||||
| GPL14372_Probes_20468 | ||||||
| GPL14372_Probes_20469 | ||||||
| RNASeq_FPKM | WBls:0000032 | 19.4439 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 11.4839 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-17.25 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
