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WormBase Tree Display for CDS: PPA17446

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Name Class

PPA17446SMapS_parentSequencePPA_ChrI
StructureSource_exons1145
233363
DB_infoDatabasepristionchus.orgcdsgene-UMS-S139-20.49
DB_remarkPPA-MOA-2 protein; contains similarity to Pfam domain PF07189 (Splicing factor 3B subunit 10 (SF3b10)); contains similarity to Interpro domains IPR017089 (Splicing factor 3B, subunit 5), IPR009846 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00107000
Corresponding_transcriptPPA17446.1
Corresponding_proteinPP63664
Corresponding_oligo_setGPL14372_Probes_54660
GPL14372_Probes_54661
GPL14372_Probes_54662
Matching_cDNABM320050Inferred_automaticallytranscript_builder.pl
FG097045Inferred_automaticallytranscript_builder.pl
BM320691Inferred_automaticallytranscript_builder.pl
FG100855Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_54660
GPL14372_Probes_54661
GPL14372_Probes_54662
RNASeq_FPKMWBls:0000032235.148From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:0000101301.201From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMS-S139-20.49Curator_confirmedWBPerson4055
Methodcurated