WormBase Tree Display for CDS: PPA17446
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PPA17446 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 145 | |||
233 | 363 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S139-20.49 | ||
DB_remark | PPA-MOA-2 protein; contains similarity to Pfam domain PF07189 (Splicing factor 3B subunit 10 (SF3b10)); contains similarity to Interpro domains IPR017089 (Splicing factor 3B, subunit 5), IPR009846 (Splicing factor 3B subunit 5/RDS3 complex subunit 10) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00107000 | ||||
Corresponding_transcript | PPA17446.1 | |||||
Corresponding_protein | PP63664 | |||||
Corresponding_oligo_set | GPL14372_Probes_54660 | |||||
GPL14372_Probes_54661 | ||||||
GPL14372_Probes_54662 | ||||||
Matching_cDNA | BM320050 | Inferred_automatically | transcript_builder.pl | |||
FG097045 | Inferred_automatically | transcript_builder.pl | ||||
BM320691 | Inferred_automatically | transcript_builder.pl | ||||
FG100855 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_54660 | |||||
GPL14372_Probes_54661 | ||||||
GPL14372_Probes_54662 | ||||||
RNASeq_FPKM | WBls:0000032 | 235.148 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 301.201 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S139-20.49 | Curator_confirmed | WBPerson4055 | |||
Method | curated |