WormBase Tree Display for CDS: PPA17572
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| PPA17572 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (28) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-13.9 | ||
| DB_remark | PPA-RGL-1 protein; contains similarity to Pfam domains PF00617 (RasGEF domain), PF00618 (RasGEF N-terminal motif), PF00788 (Ras association (RalGDS/AF-6) domain); contains similarity to Interpro domains IPR029071 (Ubiquitin-like domain superfamily), IPR001895 (Ras guanine-nucleotide exchange factors catalytic domain), IPR000159 (Ras-associating domain), IPR000651 (Ras-like guanine nucleotide exchange factor, N-terminal), IPR008937 (Ras-like guanine nucleotide exchange factor), IPR023578 (Ras guanine nucleotide exchange factor domain superfamily), IPR036964 (Ras guanine-nucleotide exchange factor, catalytic domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00107126 | ||||
| Corresponding_transcript | PPA17572.1 | |||||
| Corresponding_protein | PP74668 | |||||
| Corresponding_oligo_set | GPL14372_Probes_88012 | |||||
| Microarray_results | GPL14372_Probes_88012 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 21 Feb 2019 09:50:56 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S139-13.9 | Curator_confirmed | WBPerson4055 | |||
| [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | ||||
| Method | curated |
