WormBase Tree Display for CDS: PPA17668
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| PPA17668 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (48) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S7-56.53 | ||
| TREEFAM | TREEFAM_ID | TF105199 | ||||
| DB_remark | contains similarity to Pfam domains PF00005 (ABC transporter), PF00664 (ABC transporter transmembrane region); contains similarity to Interpro domains IPR011527 (ABC transporter type 1, transmembrane domain), IPR005292 (Multi drug resistance-associated protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003439 (ABC transporter-like, ATP-binding domain), IPR036640 (ABC transporter type 1, transmembrane domain superfamily), IPR003593 (AAA+ ATPase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00107222 | ||||
| Corresponding_transcript | PPA17668.1 | |||||
| Corresponding_protein | PP53765 | |||||
| Corresponding_oligo_set | GPL14372_Probes_53540 | |||||
| GPL14372_Probes_53541 | ||||||
| GPL14372_Probes_53542 | ||||||
| GPL14372_Probes_53543 | ||||||
| GPL14372_Probes_53544 | ||||||
| Microarray_results | GPL14372_Probes_53540 | |||||
| GPL14372_Probes_53541 | ||||||
| GPL14372_Probes_53542 | ||||||
| GPL14372_Probes_53543 | ||||||
| GPL14372_Probes_53544 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.30977 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMS-S7-56.53 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
