WormBase Tree Display for CDS: PPA17707
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| PPA17707 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (56) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-54.30 | ||
| DB_remark | PPA-ODR-1 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00100 (Zona pellucida-like domain), PF00211 (Adenylate and Guanylate cyclase catalytic domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR029787 (Nucleotide cyclase), IPR028082 (Periplasmic binding protein-like I), IPR000719 (Protein kinase domain), IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase), IPR001507 (Zona pellucida domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00107261 | ||||
| Corresponding_transcript | PPA17707.1 | |||||
| Corresponding_protein | PP66199 | |||||
| Corresponding_oligo_set | GPL14372_Probes_53476 | |||||
| GPL14372_Probes_53477 | ||||||
| GPL14372_Probes_53478 | ||||||
| GPL14372_Probes_8549 | ||||||
| GPL14372_Probes_8550 | ||||||
| GPL14372_Probes_8551 | ||||||
| GPL14372_Probes_8552 | ||||||
| GPL14372_Probes_8553 | ||||||
| GPL14372_Probes_8554 | ||||||
| Microarray_results | GPL14372_Probes_8549 | |||||
| GPL14372_Probes_8550 | ||||||
| GPL14372_Probes_8551 | ||||||
| GPL14372_Probes_8552 | ||||||
| GPL14372_Probes_8553 | ||||||
| GPL14372_Probes_8554 | ||||||
| GPL14372_Probes_53476 | ||||||
| GPL14372_Probes_53477 | ||||||
| GPL14372_Probes_53478 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.747895 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S7-54.30 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
