WormBase Tree Display for CDS: PPA17989

PPA17989 Evidence: Curator_confirmed: WBPerson4055
    Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: PPA_ChrIII
  Structure: Source_exons (24)
  DB_info: Database: pristionchus.org cds gene-UMM-S413-2.68
      TREEFAM TREEFAM_ID TF323183
    DB_remark: PPA-RFP-1 protein; contains similarity to Pfam domain PF13920 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013956 (E3 ubiquitin ligase Bre1)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00107543
    Corresponding_transcript: PPA17989.1
    Corresponding_protein: PP75683
    Corresponding_oligo_set: GPL14372_Probes_47890
      GPL14372_Probes_47891
      GPL14372_Probes_47892
      GPL14372_Probes_47893
      GPL14372_Probes_47895
      GPL14372_Probes_47896
      GPL14372_Probes_47897
      GPL14372_Probes_47898
    Matching_cDNA: EB183541 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_47890
      GPL14372_Probes_47891
      GPL14372_Probes_47892
      GPL14372_Probes_47893
      GPL14372_Probes_47895
      GPL14372_Probes_47896
      GPL14372_Probes_47897
      GPL14372_Probes_47898
    RNASeq_FPKM: WBls:0000032 146.533 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Last_reviewed: 20 Nov 2019 16:22:52 WBPerson4055
    Remark: [171116 mh6] renamed from gene-UMM-S413-2.68 Curator_confirmed: WBPerson4055
      [191120 mh6] This CDS has been updated based on the RNAseq data. Curator_confirmed: WBPerson4055
        From_analysis: RNASeq
  Method: curated