WormBase Tree Display for CDS: PPA18028
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PPA18028 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 42 | |||
267 | 381 | |||||
485 | 600 | |||||
829 | 922 | |||||
1010 | 1113 | |||||
1255 | 1338 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-27.59 | ||
DB_remark | contains similarity to Pfam domain PF00025 (ADP-ribosylation factor family); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR006689 (Small GTPase superfamily, ARF/SAR type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00107582 | ||||
Corresponding_transcript | PPA18028.1 | |||||
Corresponding_protein | PP57108 | |||||
Corresponding_oligo_set | GPL14372_Probes_35938 | |||||
GPL14372_Probes_35939 | ||||||
GPL14372_Probes_35940 | ||||||
Microarray_results | GPL14372_Probes_35938 | |||||
GPL14372_Probes_35939 | ||||||
GPL14372_Probes_35940 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-27.59 | Curator_confirmed | WBPerson4055 | |||
Method | curated |