WormBase Tree Display for CDS: PPA18071
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PPA18071 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 153 | |||
258 | 371 | |||||
559 | 618 | |||||
1468 | 1530 | |||||
1806 | 1844 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-25.47 | ||
TREEFAM | TREEFAM_ID | TF300139 | ||||
DB_remark | PPA-APS-2 protein; contains similarity to Pfam domain PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR027156 (AP-2 complex subunit sigma), IPR016635 (Adaptor protein complex, sigma subunit), IPR011012 (Longin-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00107625 | ||||
Corresponding_transcript | PPA18071.1 | |||||
Corresponding_protein | PP64876 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-25.47 | Curator_confirmed | WBPerson4055 | |||
Method | curated |