WormBase Tree Display for CDS: PPA18138
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PPA18138 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-21.4 | ||
DB_remark | contains similarity to Pfam domain PF07767 (Nop53 (60S ribosomal biogenesis)); contains similarity to Interpro domain IPR011687 (Ribosome biogenesis protein Nop53/GLTSCR2) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00107692 | ||||
Corresponding_transcript | PPA18138.1 | |||||
Corresponding_protein | PP63771 | |||||
Corresponding_oligo_set | GPL14372_Probes_35816 | |||||
GPL14372_Probes_35817 | ||||||
GPL14372_Probes_35819 | ||||||
Matching_cDNA | AW097494 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_35816 | |||||
GPL14372_Probes_35817 | ||||||
GPL14372_Probes_35819 | ||||||
RNASeq_FPKM | WBls:0000032 | 20.545 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 17.3324 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-21.4 | Curator_confirmed | WBPerson4055 | |||
Method | curated |