WormBase Tree Display for CDS: PPA18140
expand all nodes | collapse all nodes | view schema
| PPA18140 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-21.45 | ||
| TREEFAM | TREEFAM_ID | TF351335 | ||||
| DB_remark | contains similarity to Pfam domains PF00076 (RNA recognition motif), PF04389 (Peptidase family M28); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR007484 (Peptidase M28), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00107694 | ||||
| Corresponding_transcript | PPA18140.1 | |||||
| Corresponding_protein | PP67271 | |||||
| Corresponding_oligo_set | GPL14372_Probes_35805 | |||||
| GPL14372_Probes_35807 | ||||||
| GPL14372_Probes_35808 | ||||||
| GPL14372_Probes_35809 | ||||||
| Matching_cDNA | FE941558 | Inferred_automatically | transcript_builder.pl | |||
| BQ087943 | Inferred_automatically | transcript_builder.pl | ||||
| BQ088181 | Inferred_automatically | transcript_builder.pl | ||||
| FG105309 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_35805 | |||||
| GPL14372_Probes_35807 | ||||||
| GPL14372_Probes_35808 | ||||||
| GPL14372_Probes_35809 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.95929 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.62788 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S7-21.45 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
