WormBase Tree Display for CDS: PPA18220
expand all nodes | collapse all nodes | view schema
PPA18220 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 15 | |||
217 | 305 | |||||
534 | 586 | |||||
802 | 886 | |||||
1080 | 1140 | |||||
1212 | 1287 | |||||
1357 | 1394 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S7-16.22 | ||
DB_remark | contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00107774 | ||||
Corresponding_transcript | PPA18220.1 | |||||
Corresponding_protein | PP58788 | |||||
Corresponding_oligo_set | GPL14372_Probes_344 | |||||
GPL14372_Probes_345 | ||||||
Microarray_results | GPL14372_Probes_344 | |||||
GPL14372_Probes_345 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S7-16.22 | Curator_confirmed | WBPerson4055 | |||
Method | curated |