WormBase Tree Display for CDS: PPA18346
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PPA18346 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 136 | |||
449 | 561 | |||||
780 | 854 | |||||
1128 | 1169 | |||||
1341 | 1430 | |||||
2214 | 2291 | |||||
2655 | 2740 | |||||
5826 | 5991 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-7.45 | ||
TREEFAM | TREEFAM_ID | TF315055 | ||||
DB_remark | contains similarity to Pfam domain PF04893 (Yip1 domain); contains similarity to Interpro domain IPR006977 (Yip1 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00107900 | ||||
Corresponding_transcript | PPA18346.1 | |||||
Corresponding_protein | PP68678 | |||||
Corresponding_oligo_set | GPL14372_Probes_143 | |||||
GPL14372_Probes_35560 | ||||||
GPL14372_Probes_35561 | ||||||
GPL14372_Probes_35562 | ||||||
GPL14372_Probes_35563 | ||||||
Matching_cDNA | BM320646 | Inferred_automatically | transcript_builder.pl | |||
AW144987 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_143 | |||||
GPL14372_Probes_35560 | ||||||
GPL14372_Probes_35561 | ||||||
GPL14372_Probes_35562 | ||||||
GPL14372_Probes_35563 | ||||||
RNASeq_FPKM | WBls:0000032 | 11.0717 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 6.53945 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-7.45 | Curator_confirmed | WBPerson4055 | |||
Method | curated |