WormBase Tree Display for CDS: PPA18371
expand all nodes | collapse all nodes | view schema
PPA18371 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (29) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S245-7.40 | ||
DB_remark | contains similarity to Pfam domains PF01189 (16S rRNA methyltransferase RsmB/F), PF10316 (Serpentine type 7TM GPCR chemoreceptor Srbc); contains similarity to Interpro domains IPR019420 (7TM GPCR, serpentine receptor class bc (Srbc)), IPR001678 (SAM-dependent methyltransferase RsmB-F/NOP2-type domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR023267 (RNA (C5-cytosine) methyltransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
End_not_found | ||||||
Visible | Gene | WBGene00107925 | ||||
Corresponding_transcript | PPA18371.1 | |||||
Corresponding_protein | PP74230 | |||||
Corresponding_oligo_set (13) | ||||||
Matching_cDNA | AI986753 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (13) | ||||||
RNASeq_FPKM | WBls:0000032 | 2.70675 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.58975 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S245-7.40 | Curator_confirmed | WBPerson4055 | |||
Method | curated |