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WormBase Tree Display for CDS: PPA18371

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Name Class

PPA18371SMapS_parentSequencePPA_ChrII
StructureSource_exons (29)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S245-7.40
DB_remarkcontains similarity to Pfam domains PF01189 (16S rRNA methyltransferase RsmB/F), PF10316 (Serpentine type 7TM GPCR chemoreceptor Srbc); contains similarity to Interpro domains IPR019420 (7TM GPCR, serpentine receptor class bc (Srbc)), IPR001678 (SAM-dependent methyltransferase RsmB-F/NOP2-type domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR023267 (RNA (C5-cytosine) methyltransferase)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
End_not_found
VisibleGeneWBGene00107925
Corresponding_transcriptPPA18371.1
Corresponding_proteinPP74230
Corresponding_oligo_set (13)
Matching_cDNAAI986753Inferred_automaticallytranscript_builder.pl
Microarray_results (13)
RNASeq_FPKMWBls:00000322.70675From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001019.58975From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S245-7.40Curator_confirmedWBPerson4055
Methodcurated