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WormBase Tree Display for CDS: PPA18396

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Name Class

PPA18396SMapS_parentSequencePPA_ChrII
StructureSource_exons (34)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S245-8.27
TREEFAMTREEFAM_IDTF315291
DB_remarkPPA-LACT-5 protein; contains similarity to Pfam domains PF00144 (Beta-lactamase), PF01265 (Cytochrome c/c1 heme lyase); contains similarity to Interpro domains IPR001466 (Beta-lactamase-related), IPR000511 (Holocytochrome c/c1 synthase), IPR012338 (Beta-lactamase/transpeptidase-like)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00107950
Corresponding_transcriptPPA18396.1
Corresponding_proteinPP64067
Corresponding_oligo_set (12)
Matching_cDNABQ088053Inferred_automaticallytranscript_builder.pl
Microarray_results (12)
RNASeq_FPKMWBls:000003220.0249From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010114.9358From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S245-8.27Curator_confirmedWBPerson4055
Methodcurated