WormBase Tree Display for CDS: PPA18396
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PPA18396 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (34) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S245-8.27 | ||
TREEFAM | TREEFAM_ID | TF315291 | ||||
DB_remark | PPA-LACT-5 protein; contains similarity to Pfam domains PF00144 (Beta-lactamase), PF01265 (Cytochrome c/c1 heme lyase); contains similarity to Interpro domains IPR001466 (Beta-lactamase-related), IPR000511 (Holocytochrome c/c1 synthase), IPR012338 (Beta-lactamase/transpeptidase-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00107950 | ||||
Corresponding_transcript | PPA18396.1 | |||||
Corresponding_protein | PP64067 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | BQ088053 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 20.0249 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.9358 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S245-8.27 | Curator_confirmed | WBPerson4055 | |||
Method | curated |