WormBase Tree Display for CDS: PPA18411
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PPA18411 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 1854 | |||
1906 | 1985 | |||||
2069 | 2204 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S245-9.4 | ||
DB_remark | contains similarity to Pfam domains PF13086 (AAA domain), PF13087 (AAA domain); contains similarity to Interpro domains IPR041679 (DNA2/NAM7 helicase-like, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR041677 (DNA2/NAM7 helicase, helicase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00107965 | ||||
Corresponding_transcript | PPA18411.1 | |||||
Corresponding_protein | PP35235 | |||||
Corresponding_oligo_set | GPL14372_Probes_67564 | |||||
GPL14372_Probes_67565 | ||||||
GPL14372_Probes_67566 | ||||||
GPL14372_Probes_67567 | ||||||
Matching_cDNA | BI500666 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_67564 | |||||
GPL14372_Probes_67565 | ||||||
GPL14372_Probes_67566 | ||||||
GPL14372_Probes_67567 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S245-9.4 | Curator_confirmed | WBPerson4055 | |||
Method | curated |