WormBase Tree Display for CDS: PPA18495

PPA18495 SMap: S_parent: Sequence: PPA_ChrII
  Structure: Source_exons: 1 51
      103 166
      216 300
      424 487
      695 763
      968 1036
      2958 3057
      3672 3724
      3772 3840
  DB_info: Database: pristionchus.org cds gene-UMM-S245-13.12
    DB_remark: PPA-CPN-2 protein; contains similarity to Pfam domains PF00307 (Calponin homology (CH) domain), PF00402 (Calponin family repeat); contains similarity to Interpro domains IPR001715 (Calponin homology domain), IPR003096 (Smooth muscle protein/calponin), IPR036872 (CH domain superfamily), IPR000557 (Calponin repeat)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00108049
    Corresponding_transcript: PPA18495.1
    Corresponding_protein: PP71928
    Corresponding_oligo_set: GPL14372_Probes_17473
      GPL14372_Probes_67781
      GPL14372_Probes_67782
      GPL14372_Probes_67783
      GPL14372_Probes_67784
    Matching_cDNA: FE933341 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_17473
      GPL14372_Probes_67781
      GPL14372_Probes_67782
      GPL14372_Probes_67783
      GPL14372_Probes_67784
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 17.8548 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMM-S245-13.12 Curator_confirmed: WBPerson4055
  Method: curated