WormBase Tree Display for CDS: PPA18530
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PPA18530 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (30) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S245-14.28 | ||
DB_remark | contains similarity to Pfam domains PF00149 (Calcineurin-like phosphoesterase), PF00999 (Sodium/hydrogen exchanger family); contains similarity to Interpro domains IPR018422 (Cation/H+ exchanger, CPA1 family), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase), IPR006153 (Cation/H+ exchanger), IPR004843 (Calcineurin-like phosphoesterase domain, ApaH type), IPR004709 (Na+/H+ exchanger) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00108084 | ||||
Corresponding_transcript | PPA18530.1 | |||||
Corresponding_protein | PP56778 | |||||
Corresponding_oligo_set | GPL14372_Probes_67896 | |||||
GPL14372_Probes_67899 | ||||||
Microarray_results | GPL14372_Probes_67896 | |||||
GPL14372_Probes_67899 | ||||||
RNASeq_FPKM | WBls:0000032 | 8.4063 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.50924 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S245-14.28 | Curator_confirmed | WBPerson4055 | |||
Method | curated |