WormBase Tree Display for CDS: PPA18586
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PPA18586 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (43) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S245-17.64 | ||
TREEFAM | TREEFAM_ID | TF300540 | ||||
DB_remark | PPA-CTL-1 protein; contains similarity to Pfam domains PF00199 (Catalase), PF01757 (Acyltransferase family), PF06628 (Catalase-related immune-responsive); contains similarity to Interpro domains IPR018028 (Catalase, mono-functional, haem-containing), IPR011614 (Catalase core domain), IPR006621 (Nose resistant-to-fluoxetine protein, N-terminal), IPR002656 (Acyltransferase 3 domain), IPR020835 (Catalase superfamily), IPR010582 (Catalase immune-responsive domain), IPR037060 () | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00108140 | ||||
Corresponding_transcript | PPA18586.1 | |||||
Corresponding_protein | PP67860 | |||||
Corresponding_oligo_set | GPL14372_Probes_68095 | |||||
GPL14372_Probes_68096 | ||||||
GPL14372_Probes_68098 | ||||||
GPL14372_Probes_68099 | ||||||
Matching_cDNA | AW114250 | Inferred_automatically | transcript_builder.pl | |||
FG100270 | Inferred_automatically | transcript_builder.pl | ||||
BI773589 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_68095 | |||||
GPL14372_Probes_68096 | ||||||
GPL14372_Probes_68098 | ||||||
GPL14372_Probes_68099 | ||||||
RNASeq_FPKM | WBls:0000032 | 8.76473 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.60026 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S245-17.64 | Curator_confirmed | WBPerson4055 | |||
Method | curated |