WormBase Tree Display for CDS: PPA18612
expand all nodes | collapse all nodes | view schema
PPA18612 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S469-1.87 | ||
DB_remark | PPA-FRM-7 protein; contains similarity to Pfam domains PF00373 (FERM central domain), PF09380 (FERM C-terminal PH-like domain); contains similarity to Interpro domains IPR014352 (FERM/acyl-CoA-binding protein superfamily), IPR019748 (FERM central domain), IPR011993 (PH-like domain superfamily), IPR035963 (FERM superfamily, second domain), IPR018980 (FERM, C-terminal PH-like domain), IPR019749 (Band 4.1 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00108166 | ||||
Corresponding_transcript | PPA18612.1 | |||||
Corresponding_protein | PP66403 | |||||
Corresponding_oligo_set | GPL14372_Probes_43506 | |||||
GPL14372_Probes_43509 | ||||||
GPL14372_Probes_43510 | ||||||
Microarray_results | GPL14372_Probes_43506 | |||||
GPL14372_Probes_43509 | ||||||
GPL14372_Probes_43510 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.4533 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S469-1.87 | Curator_confirmed | WBPerson4055 | |||
Method | curated |