WormBase Tree Display for CDS: PPA18624
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| PPA18624 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrIII | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S413-0.60 | ||
| TREEFAM | TREEFAM_ID | TF106126 | ||||
| DB_remark | PPA-GOP-3 protein; contains similarity to Pfam domain PF01103 (Omp85 superfamily domain); contains similarity to Interpro domains IPR039910 (Surface antigen D15-like), IPR000184 (Bacterial surface antigen (D15)) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00108178 | ||||
| Corresponding_transcript | PPA18624.1 | |||||
| Corresponding_protein | PP33177 | |||||
| Corresponding_oligo_set | GPL14372_Probes_42829 | |||||
| GPL14372_Probes_42830 | ||||||
| GPL14372_Probes_42832 | ||||||
| GPL14372_Probes_42833 | ||||||
| Matching_cDNA | FE940939 | Inferred_automatically | transcript_builder.pl | |||
| AW115176 | Inferred_automatically | transcript_builder.pl | ||||
| FG095137 | Inferred_automatically | transcript_builder.pl | ||||
| FE937850 | Inferred_automatically | transcript_builder.pl | ||||
| FG096942 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_42829 | |||||
| GPL14372_Probes_42830 | ||||||
| GPL14372_Probes_42832 | ||||||
| GPL14372_Probes_42833 | ||||||
| RNASeq_FPKM | WBls:0000032 | 62.912 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 70.9267 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S413-0.60 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
