WormBase Tree Display for CDS: PPA18797
expand all nodes | collapse all nodes | view schema
PPA18797 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons (28) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S293-5.4 | ||
DB_remark | PPA-HID-1 protein; contains similarity to Pfam domains PF09742 (Dyggve-Melchior-Clausen syndrome protein), PF14625 (Lustrin, cysteine-rich repeated domain); contains similarity to Interpro domains IPR028150 (Lustrin, cysteine-rich repeated), IPR026705 (Hid-1/Ecm30), IPR006150 (Cysteine-rich repeat) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00108351 | ||||
Corresponding_transcript | PPA18797.1 | |||||
Corresponding_protein | PP59918 | |||||
Corresponding_oligo_set (14) | ||||||
Microarray_results (14) | ||||||
RNASeq_FPKM | WBls:0000032 | 5.81161 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.43157 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S293-5.4 | Curator_confirmed | WBPerson4055 | |||
Method | curated |