WormBase Tree Display for CDS: PPA18812
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| PPA18812 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (31) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S293-6.13 | ||
| TREEFAM | TREEFAM_ID | TF105667 | ||||
| DB_remark | PPA-MATH-33.1 protein; contains similarity to Pfam domains PF00443 (Ubiquitin carboxyl-terminal hydrolase), PF00917 (MATH domain), PF12436 (ICP0-binding domain of Ubiquitin-specific protease 7), PF14533 (Ubiquitin-specific protease C-terminal); contains similarity to Interpro domains IPR024729 (Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain), IPR038765 (Papain-like cysteine peptidase superfamily), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal), IPR008974 (TRAF-like), IPR002083 (MATH/TRAF domain), IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00108366 | ||||
| Corresponding_transcript | PPA18812.1 | |||||
| Corresponding_protein | PP67241 | |||||
| Corresponding_oligo_set | GPL14372_Probes_75686 | |||||
| GPL14372_Probes_75687 | ||||||
| GPL14372_Probes_75688 | ||||||
| GPL14372_Probes_75689 | ||||||
| Microarray_results | GPL14372_Probes_75686 | |||||
| GPL14372_Probes_75687 | ||||||
| GPL14372_Probes_75688 | ||||||
| GPL14372_Probes_75689 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.32542 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.0216 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S293-6.13 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
