WormBase Tree Display for CDS: PPA18952
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| PPA18952 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (29) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-23.64 | ||
| DB_remark | contains similarity to Pfam domains PF02207 (Putative zinc finger in N-recognin (UBR box)), PF12937 (F-box-like), PF13229 (Right handed beta helix region); contains similarity to Interpro domains IPR022441 (Parallel beta-helix repeat-2), IPR006626 (Parallel beta-helix repeat), IPR029799 (), IPR039448 (Right handed beta helix domain), IPR036047 (F-box-like domain superfamily), IPR012334 (Pectin lyase fold), IPR006633 (Carbohydrate-binding/sugar hydrolysis domain), IPR011050 (Pectin lyase fold/virulence factor), IPR001810 (F-box domain), IPR003126 (Zinc finger, UBR-type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00108506 | ||||
| Corresponding_transcript | PPA18952.1 | |||||
| Corresponding_protein | PP64046 | |||||
| Corresponding_oligo_set | GPL14372_Probes_6696 | |||||
| GPL14372_Probes_6697 | ||||||
| GPL14372_Probes_6698 | ||||||
| GPL14372_Probes_6699 | ||||||
| GPL14372_Probes_6700 | ||||||
| Microarray_results | GPL14372_Probes_6696 | |||||
| GPL14372_Probes_6697 | ||||||
| GPL14372_Probes_6698 | ||||||
| GPL14372_Probes_6699 | ||||||
| GPL14372_Probes_6700 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-23.64 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
