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WormBase Tree Display for CDS: PPA18978

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Name Class

PPA18978SMapS_parentSequencePPA_ChrI
StructureSource_exons (18)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-25.61
TREEFAMTREEFAM_IDTF300542
DB_remarkcontains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)), PF02359 (Cell division protein 48 (CDC48), N-terminal domain), PF02933 (Cell division protein 48 (CDC48), domain 2), PF09336 (Vps4 C terminal oligomerisation domain), PF17862 (AAA+ lid domain); contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR015415 (Spastin/Vps4, C-terminal), IPR003338 (CDC48, N-terminal subdomain), IPR041569 (AAA ATPase, AAA+ lid domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005938 (AAA ATPase, CDC48 family), IPR029067 (CDC48 domain 2-like superfamily), IPR004201 (CDC48, domain 2), IPR003593 (AAA+ ATPase domain), IPR009010 (Aspartate decarboxylase-like domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00108532
Corresponding_transcriptPPA18978.1
Corresponding_proteinPP68334
Corresponding_oligo_setGPL14372_Probes_83123
GPL14372_Probes_83124
GPL14372_Probes_83125
GPL14372_Probes_83126
Matching_cDNABQ087846Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_83123
GPL14372_Probes_83124
GPL14372_Probes_83125
GPL14372_Probes_83126
RNASeq_FPKMWBls:000003221.6043From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.40187From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S71-25.61Curator_confirmedWBPerson4055
Methodcurated