WormBase Tree Display for CDS: PPA18978
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PPA18978 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-25.61 | ||
TREEFAM | TREEFAM_ID | TF300542 | ||||
DB_remark | contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)), PF02359 (Cell division protein 48 (CDC48), N-terminal domain), PF02933 (Cell division protein 48 (CDC48), domain 2), PF09336 (Vps4 C terminal oligomerisation domain), PF17862 (AAA+ lid domain); contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR015415 (Spastin/Vps4, C-terminal), IPR003338 (CDC48, N-terminal subdomain), IPR041569 (AAA ATPase, AAA+ lid domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005938 (AAA ATPase, CDC48 family), IPR029067 (CDC48 domain 2-like superfamily), IPR004201 (CDC48, domain 2), IPR003593 (AAA+ ATPase domain), IPR009010 (Aspartate decarboxylase-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00108532 | ||||
Corresponding_transcript | PPA18978.1 | |||||
Corresponding_protein | PP68334 | |||||
Corresponding_oligo_set | GPL14372_Probes_83123 | |||||
GPL14372_Probes_83124 | ||||||
GPL14372_Probes_83125 | ||||||
GPL14372_Probes_83126 | ||||||
Matching_cDNA | BQ087846 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_83123 | |||||
GPL14372_Probes_83124 | ||||||
GPL14372_Probes_83125 | ||||||
GPL14372_Probes_83126 | ||||||
RNASeq_FPKM | WBls:0000032 | 21.6043 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.40187 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-25.61 | Curator_confirmed | WBPerson4055 | |||
Method | curated |