WormBase Tree Display for CDS: PPA18981
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PPA18981 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 99 | |||
472 | 660 | |||||
877 | 978 | |||||
1107 | 1211 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-25.52 | ||
TREEFAM | TREEFAM_ID | TF354233 | ||||
DB_remark | contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00108535 | ||||
Corresponding_transcript | PPA18981.1 | |||||
Corresponding_protein | PP23369 | |||||
Corresponding_oligo_set | GPL14372_Probes_83118 | |||||
GPL14372_Probes_83119 | ||||||
Microarray_results | GPL14372_Probes_83118 | |||||
GPL14372_Probes_83119 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 39.1556 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-25.52 | Curator_confirmed | WBPerson4055 | |||
Method | curated |