WormBase Tree Display for CDS: PPA19002
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| PPA19002 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (51) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-27.0 | ||
| TREEFAM | TREEFAM_ID | TF313734 | ||||
| DB_remark | PPA-ALGN-7 protein; contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)), PF00953 (Glycosyl transferase family 4), PF09336 (Vps4 C terminal oligomerisation domain), PF11571 (Mediator complex subunit 27), PF17862 (AAA+ lid domain); contains similarity to Interpro domains IPR021627 (Mediator complex, subunit Med27), IPR003959 (ATPase, AAA-type, core), IPR015415 (Spastin/Vps4, C-terminal), IPR041569 (AAA ATPase, AAA+ lid domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000715 (Glycosyl transferase, family 4), IPR003593 (AAA+ ATPase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00108556 | ||||
| Corresponding_transcript | PPA19002.1 | |||||
| Corresponding_protein | PP54694 | |||||
| Corresponding_oligo_set | GPL14372_Probes_83084 | |||||
| GPL14372_Probes_83085 | ||||||
| GPL14372_Probes_83086 | ||||||
| GPL14372_Probes_83087 | ||||||
| GPL14372_Probes_83088 | ||||||
| GPL14372_Probes_83089 | ||||||
| GPL14372_Probes_83090 | ||||||
| Matching_cDNA | AW114790 | Inferred_automatically | transcript_builder.pl | |||
| AW114593 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_83084 | |||||
| GPL14372_Probes_83085 | ||||||
| GPL14372_Probes_83086 | ||||||
| GPL14372_Probes_83087 | ||||||
| GPL14372_Probes_83088 | ||||||
| GPL14372_Probes_83089 | ||||||
| GPL14372_Probes_83090 | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.2389 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.53527 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-27.0 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
