WormBase Tree Display for CDS: PPA19092
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PPA19092 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (42) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-30.5 | ||
TREEFAM | TREEFAM_ID | TF317296 | ||||
DB_remark | PPA-SOS-1 protein; contains similarity to Pfam domains PF00617 (RasGEF domain), PF00618 (RasGEF N-terminal motif), PF00621 (RhoGEF domain); contains similarity to Interpro domains IPR009072 (Histone-fold), IPR001895 (Ras guanine-nucleotide exchange factors catalytic domain), IPR000651 (Ras-like guanine nucleotide exchange factor, N-terminal), IPR008937 (Ras-like guanine nucleotide exchange factor), IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR023578 (Ras guanine nucleotide exchange factor domain superfamily), IPR011993 (PH-like domain superfamily), IPR036964 (Ras guanine-nucleotide exchange factor, catalytic domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00108646 | ||||
Corresponding_transcript | PPA19092.1 | |||||
Corresponding_protein | PP60227 | |||||
Corresponding_oligo_set | GPL14372_Probes_27667 | |||||
GPL14372_Probes_27669 | ||||||
GPL14372_Probes_27670 | ||||||
GPL14372_Probes_27671 | ||||||
Microarray_results | GPL14372_Probes_27667 | |||||
GPL14372_Probes_27669 | ||||||
GPL14372_Probes_27670 | ||||||
GPL14372_Probes_27671 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-30.5 | Curator_confirmed | WBPerson4055 | |||
Method | curated |