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WormBase Tree Display for CDS: PPA19092

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Name Class

PPA19092SMapS_parentSequencePPA_ChrI
StructureSource_exons (42)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-30.5
TREEFAMTREEFAM_IDTF317296
DB_remarkPPA-SOS-1 protein; contains similarity to Pfam domains PF00617 (RasGEF domain), PF00618 (RasGEF N-terminal motif), PF00621 (RhoGEF domain); contains similarity to Interpro domains IPR009072 (Histone-fold), IPR001895 (Ras guanine-nucleotide exchange factors catalytic domain), IPR000651 (Ras-like guanine nucleotide exchange factor, N-terminal), IPR008937 (Ras-like guanine nucleotide exchange factor), IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR023578 (Ras guanine nucleotide exchange factor domain superfamily), IPR011993 (PH-like domain superfamily), IPR036964 (Ras guanine-nucleotide exchange factor, catalytic domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00108646
Corresponding_transcriptPPA19092.1
Corresponding_proteinPP60227
Corresponding_oligo_setGPL14372_Probes_27667
GPL14372_Probes_27669
GPL14372_Probes_27670
GPL14372_Probes_27671
Microarray_resultsGPL14372_Probes_27667
GPL14372_Probes_27669
GPL14372_Probes_27670
GPL14372_Probes_27671
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S71-30.5Curator_confirmedWBPerson4055
Methodcurated