WormBase Tree Display for CDS: PPA19113
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| PPA19113 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S71-32.4 | ||
| TREEFAM | TREEFAM_ID | TF300765 | ||||
| DB_remark | PPA-UBA-2 protein; contains similarity to Pfam domains PF00899 (ThiF family), PF10585 (Ubiquitin-activating enzyme, SCCH domain), PF14732 (Ubiquitin/SUMO-activating enzyme ubiquitin-like domain); contains similarity to Interpro domains IPR000594 (THIF-type NAD/FAD binding fold), IPR035985 (Ubiquitin-activating enzyme), IPR019572 (Ubiquitin-activating enzyme, SCCH domain), IPR030661 (SUMO-activating enzyme subunit Uba2), IPR028077 (Ubiquitin/SUMO-activating enzyme ubiquitin-like domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00108667 | ||||
| Corresponding_transcript | PPA19113.1 | |||||
| Corresponding_protein | PP75546 | |||||
| Corresponding_oligo_set | GPL14372_Probes_52497 | |||||
| GPL14372_Probes_52498 | ||||||
| GPL14372_Probes_52499 | ||||||
| GPL14372_Probes_82925 | ||||||
| GPL14372_Probes_82926 | ||||||
| GPL14372_Probes_82927 | ||||||
| GPL14372_Probes_82928 | ||||||
| GPL14372_Probes_82929 | ||||||
| Matching_cDNA | FG096409 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_52497 | |||||
| GPL14372_Probes_52498 | ||||||
| GPL14372_Probes_52499 | ||||||
| GPL14372_Probes_82925 | ||||||
| GPL14372_Probes_82926 | ||||||
| GPL14372_Probes_82927 | ||||||
| GPL14372_Probes_82928 | ||||||
| GPL14372_Probes_82929 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.93289 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 9.28958 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 08 Nov 2019 10:09:04 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMA-S71-32.4 | Curator_confirmed | WBPerson4055 | |||
| [191108 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
